Interactive Biological Networks
View and explore the full STRING network from any species. The app runs compute-heavy tasks on your local GPU, making it super fast and responsive.
Synchronized Views & Variables
Colour and size nodes based on any STRING or custom variables. Visualize these variables as histograms, pie charts, scatter plots, mind maps, or UMAP plots. All views are synchronized allowing you to select proteins in one view and see those same proteins selected in another view.
Visualize High-Dimensional Embeddings
View 2D and 3D UMAP plots of both network- and sequence-embedding spaces. Easily identify functional and structural similarities among your proteins.
Complex Structures Dashboard
View protein complex structures in an embedded Mol* viewer, allowing you to see how the proteins interact in 3D space.
Useful Links and Export Options
Export publication-quality images of any view alongside organized spreadsheets of data subsets. Other export options include FASTA and JSON (for submission to the AlphaFold Server). The app also has links to useful information on other websites such as STRING, IntAct, UniProt, NCBI, the Protein Data Bank, and relevant PubMed papers.
Secure Sandbox Python Console
Run advanced analysis natively utilizing an integrated Python/pyodide console. These scripts can also be used to perform actions in the app via the same tool calls the AI agent uses.
Integrated AI Research Agent
Connect local LLMs via LM Studio for private, free, unlimited AI compute. The agent can answer questions about the data, create interactive guides, perform actions in the app on your behalf, read the apps own code, and help debug issues.
